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Simple Parallel Exec, version #4 ( #3 < #5 > ... #24)

Created by georg. Last edited by georg, 4 years and one day ago.. Viewed 610 times. #4

Goal

Provide a very easy way to run one program with different settings on a bunch of computers in parallel and collect the results. Simple configuration and wide applicability is the aim. Fault tolerance in respect to network and adminstration errors.

Why not use something like MPI?

  • Well, first of all the program I want to run are not witten in C.
  • I could write a MPI client that executes my program with the parameters, but then I can just use a shell script.
  • I need a more flexibel way to grasp the results. For example some output goes to a file. A shell or perl script seams to be more convinient to do a flexible conversion.

Specification

Cluster

  • Linux machines
  • SSH (public key authentication)
  • (SCP sequrity copy, optional)
  • HTTP

Features

  • one master computer with server program(Is a HTTP server). SSH and SCP is needed to get the client program to the slave and start it.
  • list of slave computers (names or IPs). Every slave acts as an HTTP client.
  • command specification: commandline pattern with space holders for variables and input file generation
  • result specification: standart output and/or files
  • validation of the results
  • list with task characterised through parameters.
  • timeouts and multiply task assigments if necessary (timeout, free resources and so on)
  • collecting rules: a) plain concat b) blockwise with parameters
  • simple statistiks: which slave did what and which parameter sets failed.

Error detection

  • error while connection/authentication
  • machine dead (for whatever reason)
  • programm terminated without success
  • programm doesn't return within timeout

Server

  • initialisation: for every slave: try to start client (ssh).
If it fails: check ssh connection with dummy ssh command. Success -> copy client to slave using scp and try to start it.
  • on http request for executeable: reply with the binary
  • on http request for new task: reply with the next command to execute and all parameters.
  • on post: validate result and mark set and collect results
  • no more parameter set to process: exit and display statistik.

Client

  • gets via command line: Session ID, command name (path and name of the executeable), md5 checksum of the executeable, server name and port
  • check for the executeable: if not there or the MD5 checksum is wrong: fetch it from the server
  • fetch a task
  • run program
  • check return code: if failed -> Post failture otherwise take the results and post them.
  • fetch next task.
  • die is there is no more task or the server is not responding.
  • different settings for termination: delete executeable (if fetched), delete the client program?

Implementation Details

Configuation and Files

  • Cluster file: list of computers, one per line
  • Parameter file: csv file, cells seperated with |, parameter names in the headline and every following line contains one parameter set. All lines have to have the same amount of cells like the headline!
  • Commandline specification: Command line: a perl syntax String with parameter Variables for the parameters; Input files: Name of the file and and parameter name to write in.
  • Result specification: A result consists of a list of name and value pairs. Where name specifies the name of the particular output and value decides where the output comes from. For example output="stdout", outputfile="out.txt".
  • Validation function: function template that gets the parameter set and the result of the programm and returns success or not
  • Collection function: gets the parameters set and the result of the programm and can do whatever with it (usually print it in a file).

Error detection

Remote shell command (ssh) termination code:
  • 0 => Success: The program has been executed with success!
  • otherswise => Failure: Can have the following reasons: connection failed, programm not found or terminated without success.
To check a connection and the authentication:
ssh host echo
  • return 0 (success): Connection is OK and machine lives.
  • otherwise error

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